Cache conda packages in GIthub Actions #466
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* Try caching conda packages * Try removing mamba version * Fix path to point to correct env file * Remove defaults channel * List package versions * Move ydiff install and change mamba to conda * Pin to a modern pandas version * Remove pip from env file * Pin pip version and add ydiff install * Add back in defaults channel and strict channel priority * Remove strict priority and pip pin * Try caching the env instead of packages * Switch mamba to conda * Update path to cache conda env * Try caching the tests repo * Add missing ) to tests SHA step * Fix cache key and allow different branches to be set up * Refactor deprecated echo command * Move tests repo to different location for proper caching * Fix spelling mistake and try to fix test caching * Add branch to tests cache name * Always save the tests cache * Don't always save the tests cache (doesn't seem to work) * Remove caching of test repo, doesn't actually improve speed * Ident the steps and remove checking out tests repo into separate directory
mbowcut2
pushed a commit
to edilytics/CRISPResso2
that referenced
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Aug 15, 2024
* Try caching conda packages * Try removing mamba version * Fix path to point to correct env file * Remove defaults channel * List package versions * Move ydiff install and change mamba to conda * Pin to a modern pandas version * Remove pip from env file * Pin pip version and add ydiff install * Add back in defaults channel and strict channel priority * Remove strict priority and pip pin * Try caching the env instead of packages * Switch mamba to conda * Update path to cache conda env * Try caching the tests repo * Add missing ) to tests SHA step * Fix cache key and allow different branches to be set up * Refactor deprecated echo command * Move tests repo to different location for proper caching * Fix spelling mistake and try to fix test caching * Add branch to tests cache name * Always save the tests cache * Don't always save the tests cache (doesn't seem to work) * Remove caching of test repo, doesn't actually improve speed * Ident the steps and remove checking out tests repo into separate directory
mbowcut2
pushed a commit
to edilytics/CRISPResso2
that referenced
this pull request
Oct 14, 2024
* Try caching conda packages * Try removing mamba version * Fix path to point to correct env file * Remove defaults channel * List package versions * Move ydiff install and change mamba to conda * Pin to a modern pandas version * Remove pip from env file * Pin pip version and add ydiff install * Add back in defaults channel and strict channel priority * Remove strict priority and pip pin * Try caching the env instead of packages * Switch mamba to conda * Update path to cache conda env * Try caching the tests repo * Add missing ) to tests SHA step * Fix cache key and allow different branches to be set up * Refactor deprecated echo command * Move tests repo to different location for proper caching * Fix spelling mistake and try to fix test caching * Add branch to tests cache name * Always save the tests cache * Don't always save the tests cache (doesn't seem to work) * Remove caching of test repo, doesn't actually improve speed * Ident the steps and remove checking out tests repo into separate directory
mbowcut2
pushed a commit
to edilytics/CRISPResso2
that referenced
this pull request
Nov 8, 2024
* Try caching conda packages * Try removing mamba version * Fix path to point to correct env file * Remove defaults channel * List package versions * Move ydiff install and change mamba to conda * Pin to a modern pandas version * Remove pip from env file * Pin pip version and add ydiff install * Add back in defaults channel and strict channel priority * Remove strict priority and pip pin * Try caching the env instead of packages * Switch mamba to conda * Update path to cache conda env * Try caching the tests repo * Add missing ) to tests SHA step * Fix cache key and allow different branches to be set up * Refactor deprecated echo command * Move tests repo to different location for proper caching * Fix spelling mistake and try to fix test caching * Add branch to tests cache name * Always save the tests cache * Don't always save the tests cache (doesn't seem to work) * Remove caching of test repo, doesn't actually improve speed * Ident the steps and remove checking out tests repo into separate directory
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This speeds up the Github Actions integration tests step.